Stormalong Second Chance Home for Boys is an orphanage located in Stormalong. It is a home that, as the name states, houses boys who are orphans or do not have parents. In the episode Oh, You Animal!, the headmistress of the orphanage finds out that Flapjack lives with a whale and an "unidentified animal." She refuses to let him stay with them, thinking that boys should be raised by human parents, despite Bubbie claiming K'nuckles is a human. She kidnaps him and takes him to the orphanage, where she shows Flapjack what a bed is.
The next day, Flapjack finds out that the other 'boys' at the home are actually men, who tell him that they're pretending to be boys so someone rich might adopt them. K'nuckles uses Lolly Poopdeck to try and adopt Flapjack back, but he ends up adopting a man who likes buckets. The headmistress tells Flapjack she and her husband, who is the adventurer, plan to adopt him. Bubble and K'nuckles break in and take Flapjack back. This is the last appearance of the home and the headmistress.